IL_6SV4_449
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 6SV4|1|YQ|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_449 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1018
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6SV4|1|YQ|U|1167
6SV4|1|YQ|U|1168
6SV4|1|YQ|A|1169
6SV4|1|YQ|A|1170
6SV4|1|YQ|G|1171
*
6SV4|1|YQ|C|1328
6SV4|1|YQ|U|1329
6SV4|1|YQ|A|1330
6SV4|1|YQ|U|1331
6SV4|1|YQ|A|1332
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain YB
- 60S ribosomal protein L18-A
- Chain YG
- 60S ribosomal protein L32
- Chain YK
- 60S ribosomal protein L33-A
- Chain YO
- 60S ribosomal protein L7-A
- Chain YR
- 5S ribosomal RNA; 5S rRNA
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