IL_6SV4_453
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6SV4|1|YQ|C|1196, 6SV4|1|YQ|A|1302, 6SV4|1|YQ|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_453 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1174
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|YQ|G|1194
6SV4|1|YQ|A|1195
6SV4|1|YQ|C|1196
6SV4|1|YQ|A|1197
6SV4|1|YQ|C|1198
6SV4|1|YQ|C|1199
6SV4|1|YQ|A|1200
6SV4|1|YQ|C|1201
6SV4|1|YQ|A|1202
6SV4|1|YQ|A|1203
6SV4|1|YQ|A|1204
6SV4|1|YQ|A|1205
*
6SV4|1|YQ|U|1299
6SV4|1|YQ|G|1300
6SV4|1|YQ|A|1301
6SV4|1|YQ|A|1302
6SV4|1|YQ|A|1303
6SV4|1|YQ|A|1304
6SV4|1|YQ|U|1305
6SV4|1|YQ|G|1306
6SV4|1|YQ|G|1307
6SV4|1|YQ|A|1308
6SV4|1|YQ|U|1309
6SV4|1|YQ|G|1310
6SV4|1|YQ|G|1311
6SV4|1|YQ|C|1312
6SV4|1|YQ|G|1313
6SV4|1|YQ|C|1314
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XO
- Ubiquitin-60S ribosomal protein L40
- Chain XU
- 60S ribosomal protein L16-A
- Chain YA
- 60S ribosomal protein L3
- Chain YD
- 60S ribosomal protein L10
- Chain YK
- 60S ribosomal protein L33-A
- Chain YO
- 60S ribosomal protein L7-A
- Chain YR
- 5S ribosomal RNA; 5S rRNA
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