IL_6SV4_463
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_463 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.1187
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.1
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 32
Unit IDs
6SV4|1|YQ|G|1492
6SV4|1|YQ|G|1493
6SV4|1|YQ|U|1494
6SV4|1|YQ|U|1495
*
6SV4|1|YQ|A|1835
6SV4|1|YQ|C|1836
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XH
- 60S ribosomal protein L25
- Chain XL
- 60S ribosomal protein L39
- Chain YN
- 60S ribosomal protein L34-A
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