IL_6SV4_465
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 6SV4|1|YQ|A|1588, 6SV4|1|YQ|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_465 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1056
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
6SV4|1|YQ|C|1532
6SV4|1|YQ|U|1533
6SV4|1|YQ|A|1534
6SV4|1|YQ|A|1535
6SV4|1|YQ|G|1536
*
6SV4|1|YQ|C|1585
6SV4|1|YQ|G|1586
6SV4|1|YQ|A|1587
6SV4|1|YQ|A|1588
6SV4|1|YQ|A|1589
6SV4|1|YQ|G|1590
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XL
- 60S ribosomal protein L39
- Chain XW
- 60S ribosomal protein L2-A
- Chain YN
- 60S ribosomal protein L34-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
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