IL_6SV4_479

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6SV4|1|YQ|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_479 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.1361

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6SV4|1|YQ|A|1901
6SV4|1|YQ|G|1902
6SV4|1|YQ|U|1903
6SV4|1|YQ|C|1904
6SV4|1|YQ|G|1905
6SV4|1|YQ|G|1906
*
6SV4|1|YQ|C|2333
6SV4|1|YQ|U|2334
6SV4|1|YQ|G|2335
6SV4|1|YQ|U|2336

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XB

60S ribosomal protein L23-A

Chain YA

60S ribosomal protein L3