IL_6SV4_488

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_488 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.1104

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6SV4|1|YQ|U|2211
6SV4|1|YQ|C|2212
6SV4|1|YQ|A|2213
6SV4|1|YQ|A|2214
6SV4|1|YQ|A|2215
6SV4|1|YQ|G|2216
6SV4|1|YQ|U|2217
*
6SV4|1|YQ|A|2228
6SV4|1|YQ|A|2229
6SV4|1|YQ|C|2230
6SV4|1|YQ|C|2231
6SV4|1|YQ|A|2232
6SV4|1|YQ|A|2233
6SV4|1|YQ|G|2234

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XC

60S ribosomal protein L36-A

Chain XP

60S ribosomal protein L42-A

Chain mb

Transfer RNA; tRNA