IL_6SV4_490

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6SV4|1|YQ|A|2281, 6SV4|1|YQ|C|2287, 6SV4|1|YQ|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_490 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1053

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6SV4|1|YQ|C|2277
6SV4|1|YQ|C|2278
6SV4|1|YQ|A|2279
6SV4|1|YQ|A|2280
6SV4|1|YQ|A|2281
6SV4|1|YQ|U|2282
6SV4|1|YQ|G|2283
6SV4|1|YQ|C|2284
6SV4|1|YQ|C|2285
6SV4|1|YQ|U|2286
6SV4|1|YQ|C|2287
6SV4|1|YQ|G|2288
*
6SV4|1|YQ|C|2304
6SV4|1|YQ|G|2305
6SV4|1|YQ|C|2306
6SV4|1|YQ|G|2307

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain 2b

Small subunit ribosomal RNA; SSU rRNA

Chain XS

60S ribosomal protein L41-B

Chain nb

Transfer RNA; tRNA