IL_6SV4_498
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_498 not in the Motif Atlas
- Homologous match to IL_8C3A_108
- Geometric discrepancy: 0.1192
- The information below is about IL_8C3A_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6SV4|1|YQ|C|2666
6SV4|1|YQ|A|2667
6SV4|1|YQ|U|2668
*
6SV4|1|YQ|A|2686
6SV4|1|YQ|G|2687
6SV4|1|YQ|U|2688
6SV4|1|YQ|A|2689
6SV4|1|YQ|G|2690
Current chains
- Chain YQ
- 25S rRNA
Nearby chains
- Chain XG
- 60S ribosomal protein L11-A
- Chain YI
- 60S ribosomal protein L5
- Chain YJ
- 60S ribosomal protein L21-A
- Chain YR
- 5S ribosomal RNA; 5S rRNA
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