IL_6SV4_520

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6SV4|1|YQ|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_520 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.1595

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6SV4|1|YQ|A|3103
6SV4|1|YQ|U|3104
6SV4|1|YQ|U|3105
6SV4|1|YQ|A|3106
6SV4|1|YQ|U|3107
*
6SV4|1|YQ|A|3127
6SV4|1|YQ|G|3128
6SV4|1|YQ|A|3129
6SV4|1|YQ|A|3130
6SV4|1|YQ|U|3131

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XD

60S ribosomal protein L9-A

Chain XO

Ubiquitin-60S ribosomal protein L40

Chain XU

60S ribosomal protein L16-A