IL_6SV4_528

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_528 not in the Motif Atlas

Homologous match to IL_5TBW_128

Geometric discrepancy: 0.1998

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6SV4|1|YQ|C|3235
6SV4|1|YQ|U|3236
6SV4|1|YQ|U|3237
6SV4|1|YQ|G|3238
*
6SV4|1|YQ|C|3249
6SV4|1|YQ|U|3250
6SV4|1|YQ|U|3251
6SV4|1|YQ|G|3252

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain XU

60S ribosomal protein L16-A