IL_6SV4_536

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

6SV4|1|YQ|U|3354, 6SV4|1|YQ|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_536 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.1412

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6SV4|1|YQ|C|3349
6SV4|1|YQ|C|3350
*
6SV4|1|YQ|G|3353
6SV4|1|YQ|U|3354
6SV4|1|YQ|U|3355
6SV4|1|YQ|G|3356

Current chains

Chain YQ

25S rRNA

Nearby chains

Chain Vb

40S ribosomal protein S8-A

Chain YL

60S ribosomal protein L22-A