IL_6SV4_576

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_576 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1116

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6SV4|1|ZQ|U|834
6SV4|1|ZQ|G|835
6SV4|1|ZQ|A|836
6SV4|1|ZQ|A|837
6SV4|1|ZQ|G|838
*
6SV4|1|ZQ|U|855
6SV4|1|ZQ|G|856
6SV4|1|ZQ|G|857
6SV4|1|ZQ|A|858
6SV4|1|ZQ|G|859

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZF

60S ribosomal protein L19-A

Chain zT

60S ribosomal protein L43-A

Chain zW

60S ribosomal protein L2-A