IL_6SV4_582

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

6SV4|1|ZQ|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_582 not in the Motif Atlas

Homologous match to IL_5TBW_036

Geometric discrepancy: 0.4919

The information below is about IL_5TBW_036

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_42230.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6SV4|1|ZQ|C|977
6SV4|1|ZQ|G|978
6SV4|1|ZQ|U|979
6SV4|1|ZQ|A|980
6SV4|1|ZQ|U|981
*
6SV4|1|ZQ|A|1102
6SV4|1|ZQ|A|1103
6SV4|1|ZQ|G|1104

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZB

60S ribosomal protein L18-A

Chain ZO

60S ribosomal protein L7-A

Chain zV

60S ribosomal protein L29