IL_6SV4_624

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6SV4|1|ZQ|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_624 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1139

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6SV4|1|ZQ|C|1918
6SV4|1|ZQ|G|1919
6SV4|1|ZQ|U|1920
6SV4|1|ZQ|A|1921
6SV4|1|ZQ|A|1922
6SV4|1|ZQ|C|1923
*
6SV4|1|ZQ|G|1928
6SV4|1|ZQ|G|1929
6SV4|1|ZQ|A|1930
6SV4|1|ZQ|U|1931
6SV4|1|ZQ|A|1932
6SV4|1|ZQ|A|1933
6SV4|1|ZQ|G|1934

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain 2c

Small subunit ribosomal RNA; SSU rRNA

Chain zS

60S ribosomal protein L41-B

Chain zT

60S ribosomal protein L43-A