IL_6SV4_634
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 6SV4|1|ZQ|A|2281, 6SV4|1|ZQ|C|2287, 6SV4|1|ZQ|C|2306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_634 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.1495
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6SV4|1|ZQ|C|2277
6SV4|1|ZQ|C|2278
6SV4|1|ZQ|A|2279
6SV4|1|ZQ|A|2280
6SV4|1|ZQ|A|2281
6SV4|1|ZQ|U|2282
6SV4|1|ZQ|G|2283
6SV4|1|ZQ|C|2284
6SV4|1|ZQ|C|2285
6SV4|1|ZQ|U|2286
6SV4|1|ZQ|C|2287
6SV4|1|ZQ|G|2288
*
6SV4|1|ZQ|C|2304
6SV4|1|ZQ|G|2305
6SV4|1|ZQ|C|2306
6SV4|1|ZQ|G|2307
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain 2c
- Small subunit ribosomal RNA; SSU rRNA
- Chain nc
- Transfer RNA; tRNA
- Chain zS
- 60S ribosomal protein L41-B
Coloring options: