IL_6SV4_666

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUA*UUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_666 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.3271

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6SV4|1|ZQ|A|3167
6SV4|1|ZQ|A|3168
6SV4|1|ZQ|U|3169
6SV4|1|ZQ|A|3170
*
6SV4|1|ZQ|U|3280
6SV4|1|ZQ|U|3281
6SV4|1|ZQ|U|3282
6SV4|1|ZQ|U|3283

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZK

60S ribosomal protein L33-A