IL_6SV4_676

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

6SV4|1|ZQ|G|3369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_676 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.3244

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

6SV4|1|ZQ|U|3332
6SV4|1|ZQ|G|3333
6SV4|1|ZQ|U|3334
6SV4|1|ZQ|A|3335
6SV4|1|ZQ|A|3336
6SV4|1|ZQ|G|3337
*
6SV4|1|ZQ|C|3367
6SV4|1|ZQ|U|3368
6SV4|1|ZQ|G|3369
6SV4|1|ZQ|A|3370
6SV4|1|ZQ|G|3371

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain ZA

60S ribosomal protein L3

Chain zE

60S ribosomal protein L24-A