IL_6SV4_678
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_678 not in the Motif Atlas
- Homologous match to IL_8C3A_141
- Geometric discrepancy: 0.4279
- The information below is about IL_8C3A_141
- Detailed Annotation
- Double sheared; A in syn
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6SV4|1|ZQ|A|3342
6SV4|1|ZQ|G|3343
6SV4|1|ZQ|A|3344
6SV4|1|ZQ|G|3345
*
6SV4|1|ZQ|C|3360
6SV4|1|ZQ|G|3361
6SV4|1|ZQ|A|3362
6SV4|1|ZQ|U|3363
Current chains
- Chain ZQ
- 25S rRNA
Nearby chains
- Chain Vc
- 40S ribosomal protein S8-A
- Chain ZF
- 60S ribosomal protein L19-A
- Chain zE
- 60S ribosomal protein L24-A
Coloring options: