IL_6SV4_691

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGU*ACCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_691 not in the Motif Atlas

Geometric match to IL_7WIE_001

Geometric discrepancy: 0.3284

The information below is about IL_7WIE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15043.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

4

Unit IDs

6SV4|1|2|U|822
6SV4|1|2|G|823
6SV4|1|2|G|824
6SV4|1|2|U|825
*
6SV4|1|2|A|847
6SV4|1|2|C|848
6SV4|1|2|C|849
6SV4|1|2|A|850

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain X

40S ribosomal protein S11-A