IL_6SV4_703

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_703 not in the Motif Atlas

Geometric match to IL_7LYF_005

Geometric discrepancy: 0.3905

The information below is about IL_7LYF_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

7

Unit IDs

6SV4|1|2c|C|411
6SV4|1|2c|A|412
6SV4|1|2c|U|413
6SV4|1|2c|C|414
*
6SV4|1|2c|G|419
6SV4|1|2c|A|420
6SV4|1|2c|A|421
6SV4|1|2c|G|422

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Tc

40S ribosomal protein S6-A

Chain zB

60S ribosomal protein L23-A