IL_6SV4_721

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_721 not in the Motif Atlas

Homologous match to IL_8C3A_001

Geometric discrepancy: 0.1548

The information below is about IL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|YQ|G|5
6SV4|1|YQ|A|6
6SV4|1|YQ|C|7
*
6SV4|1|YS|G|152
6SV4|1|YS|U|153
6SV4|1|YS|C|154

Current chains

Chain YQ

25S rRNA

Chain YS

5.8S rRNA

Nearby chains

Chain XA

60S ribosomal protein L8-A

Chain XH

60S ribosomal protein L25

Chain XQ

60S ribosomal protein L15-A