IL_6SV4_752

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

6SV4|1|2c|A|1346, 6SV4|1|2c|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_752 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.3292

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

6SV4|1|2c|A|1345
6SV4|1|2c|A|1346
6SV4|1|2c|U|1347
6SV4|1|2c|A|1348
*
6SV4|1|2c|U|1377
6SV4|1|2c|U|1378
6SV4|1|2c|C|1379
6SV4|1|2c|U|1380

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Ac

40S ribosomal protein S3

Chain Fc

40S ribosomal protein S16-A

Chain Jc

40S ribosomal protein S20