IL_6SWA_049
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6SWA|1|q|A|1632, 6SWA|1|q|G|1636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_049 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1324
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SWA|1|q|G|1504
6SWA|1|q|A|1505
6SWA|1|q|A|1506
6SWA|1|q|A|1507
6SWA|1|q|G|1508
*
6SWA|1|q|C|1630
6SWA|1|q|U|1631
6SWA|1|q|A|1632
6SWA|1|q|G|1633
6SWA|1|q|U|1634
6SWA|1|q|A|1635
6SWA|1|q|G|1636
6SWA|1|q|C|1637
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain K
- 60S ribosomal protein L13
- Chain M
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L27a
- Chain h
- 60S ribosomal protein L37
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