IL_6SWA_070
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_070 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.181
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
6SWA|1|q|C|1892
6SWA|1|q|G|1893
6SWA|1|q|C|1894
6SWA|1|q|C|1895
6SWA|1|q|C|1896
6SWA|1|q|G|1897
6SWA|1|q|A|1898
6SWA|1|q|U|1899
*
6SWA|1|q|G|2045
6SWA|1|q|G|2046
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain F
- 60S ribosomal protein L7
- Chain N
- 60S ribosomal protein L13a
- Chain Q
- 60S ribosomal protein L18a
- Chain d
- 60S ribosomal protein L35a
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