IL_6SWA_076

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6SWA|1|q|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_076 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.1984

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6SWA|1|q|U|1938
6SWA|1|q|A|1939
6SWA|1|q|U|1940
6SWA|1|q|A|1941
6SWA|1|q|G|1942
6SWA|1|q|A|1943
6SWA|1|q|C|1944
6SWA|1|q|A|1945
6SWA|1|q|G|1946
*
6SWA|1|q|C|2003
6SWA|1|q|C|2004
6SWA|1|q|G|2005
6SWA|1|q|A|2006
6SWA|1|q|A|2007

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain Q

60S ribosomal protein L18a