IL_6SWA_083

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_083 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1127

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6SWA|1|q|G|2337
6SWA|1|q|U|2338
6SWA|1|q|A|2339
6SWA|1|q|G|2340
6SWA|1|q|U|2341
6SWA|1|q|A|2342
6SWA|1|q|G|2343
*
6SWA|1|q|C|3829
6SWA|1|q|G|3830
6SWA|1|q|A|3831
6SWA|1|q|A|3832
6SWA|1|q|A|3833
6SWA|1|q|C|3834

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain C

60S ribosomal protein L4

Chain O

60S ribosomal protein L17