IL_6SWA_090

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_090 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2217

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6SWA|1|q|C|2568
6SWA|1|q|G|2569
6SWA|1|q|A|2570
6SWA|1|q|U|2571
6SWA|1|q|C|2572
*
6SWA|1|q|G|2731
6SWA|1|q|G|2732
6SWA|1|q|G|2733
6SWA|1|q|A|2734
6SWA|1|q|G|2735

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain A

60S ribosomal protein L8

Chain X

60S ribosomal protein L27

Chain e

60S ribosomal protein L34