IL_6SWA_095
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 6SWA|1|q|U|2640, 6SWA|1|q|A|2653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_095 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.2662
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SWA|1|q|U|2635
6SWA|1|q|G|2636
6SWA|1|q|G|2637
6SWA|1|q|A|2638
6SWA|1|q|A|2639
6SWA|1|q|U|2640
6SWA|1|q|G|2641
*
6SWA|1|q|C|2651
6SWA|1|q|G|2652
6SWA|1|q|A|2653
6SWA|1|q|G|2654
6SWA|1|q|A|2655
6SWA|1|q|G|2656
6SWA|1|q|A|2657
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain X
- 60S ribosomal protein L27
- Chain a
- 60S ribosomal protein L30
- Chain e
- 60S ribosomal protein L34
- Chain n
- 60S ribosomal protein L37a
- Chain o
- 60S ribosomal protein L19
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