IL_6SWA_139

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SWA_139 not in the Motif Atlas

Homologous match to IL_8C3A_125

Geometric discrepancy: 0.1309

The information below is about IL_8C3A_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6SWA|1|q|C|4558
6SWA|1|q|U|4559
6SWA|1|q|C|4560
6SWA|1|q|A|4561
6SWA|1|q|G|4562
6SWA|1|q|U|4563
6SWA|1|q|A|4564
6SWA|1|q|C|4565
*
6SWA|1|q|G|4570
6SWA|1|q|G|4571
6SWA|1|q|A|4572
6SWA|1|q|A|4573
6SWA|1|q|C|4574
6SWA|1|q|C|4575
6SWA|1|q|G|4576

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain B

60S ribosomal protein L3

Chain H

60S ribosomal protein L9

Chain T

60S ribosomal protein L23