IL_6SWA_147
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUCCUG*CGUCAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SWA_147 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3723
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SWA|1|q|G|4842
6SWA|1|q|U|4843
6SWA|1|q|C|4844
6SWA|1|q|C|4845
6SWA|1|q|U|4846
6SWA|1|q|G|4847
*
6SWA|1|q|C|4888
6SWA|1|q|G|4889
6SWA|1|q|U|4890
6SWA|1|q|C|4891
6SWA|1|q|A|4892
6SWA|1|q|C|4893
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain L
- 60S ribosomal protein L14
- Chain d
- 60S ribosomal protein L35a
Coloring options: