IL_6SXO_010

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACGAG*CGACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SXO_010 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2811

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6SXO|1|L5|A|2952
6SXO|1|L5|C|2953
6SXO|1|L5|G|2954
6SXO|1|L5|A|2955
6SXO|1|L5|G|2956
*
6SXO|1|L5|C|3238
6SXO|1|L5|G|3239
6SXO|1|L5|A|3240
6SXO|1|L5|C|3241
6SXO|1|L5|U|3242

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains

Chain A

Proliferation-associated protein 2G4