IL_6SXO_012

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*UCGC

Length

7 nucleotides

Bulged bases

6SXO|1|L5|C|3579

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SXO_012 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.3836

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6SXO|1|L5|G|3286
6SXO|1|L5|C|3287
6SXO|1|L5|G|3288
*
6SXO|1|L5|U|3578
6SXO|1|L5|C|3579
6SXO|1|L5|G|3580
6SXO|1|L5|C|3581

Current chains

Chain L5

28S ribosomal RNA including ES27L-B (2839-3265)

Nearby chains