IL_6SXO_013

3D structure

PDB id

6SXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human Ebp1-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

6SXO|1|L8|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SXO_013 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.2155

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6SXO|1|L8|U|64
6SXO|1|L8|A|65
6SXO|1|L8|A|66
*
6SXO|1|L8|U|92
6SXO|1|L8|C|93
6SXO|1|L8|G|94
6SXO|1|L8|A|95

Current chains

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Lh

60S ribosomal protein L35