IL_6SZS_098

3D structure

PDB id

6SZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6SZS|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SZS_098 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0912

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6SZS|1|A|C|2636
6SZS|1|A|U|2637
6SZS|1|A|G|2638
6SZS|1|A|A|2639
6SZS|1|A|G|2640
*
6SZS|1|A|C|2774
6SZS|1|A|G|2775
6SZS|1|A|A|2776
6SZS|1|A|G|2777
6SZS|1|A|A|2778
6SZS|1|A|U|2779
6SZS|1|A|G|2780
6SZS|1|A|A|2781
6SZS|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13