IL_6SZS_138
3D structure
- PDB id
- 6SZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.06 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6SZS|1|a|A|532, 6SZS|1|a|U|534, 6SZS|1|a|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SZS_138 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1327
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SZS|1|a|G|515
6SZS|1|a|U|516
6SZS|1|a|G|517
6SZS|1|a|C|518
6SZS|1|a|C|519
6SZS|1|a|A|520
6SZS|1|a|G|521
*
6SZS|1|a|C|528
6SZS|1|a|G|529
6SZS|1|a|G|530
6SZS|1|a|U|531
6SZS|1|a|A|532
6SZS|1|a|A|533
6SZS|1|a|U|534
6SZS|1|a|A|535
6SZS|1|a|C|536
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain y
- Uncharacterized protein YqkK
- Chain z
- Peptide chain release factor 2
Coloring options: