3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
6SZS|1|a|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_143 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.1096
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6SZS|1|a|U|605
6SZS|1|a|G|606
6SZS|1|a|A|607
6SZS|1|a|A|608
6SZS|1|a|A|609
6SZS|1|a|U|610
6SZS|1|a|C|611
6SZS|1|a|C|612
*
6SZS|1|a|G|628
6SZS|1|a|A|629
6SZS|1|a|A|630
6SZS|1|a|C|631
6SZS|1|a|U|632
6SZS|1|a|G|633

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain h
30S ribosomal protein S8
Chain p
30S ribosomal protein S16
Chain q
30S ribosomal protein S17

Coloring options:


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