3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
6SZS|1|a|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SZS_148 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.1031
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

6SZS|1|a|U|684
6SZS|1|a|G|685
6SZS|1|a|U|686
6SZS|1|a|A|687
6SZS|1|a|G|688
*
6SZS|1|a|C|699
6SZS|1|a|G|700
6SZS|1|a|U|701
6SZS|1|a|A|702
6SZS|1|a|G|703
6SZS|1|a|A|704
6SZS|1|a|G|705
6SZS|1|a|A|706

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S11

Coloring options:


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