IL_6T3K_013

3D structure

PDB id

6T3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UA*UACG

Length

6 nucleotides

Bulged bases

6T3K|1|A|A|376, 6T3K|1|A|C|377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3K_013 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.0935

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

6T3K|1|A|U|365
6T3K|1|A|A|366
*
6T3K|1|A|U|375
6T3K|1|A|A|376
6T3K|1|A|C|377
6T3K|1|A|G|378

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains

Chain B

Group IIC Intron Ribozyme