IL_6T3S_014

3D structure

PDB id

6T3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

UG*CUAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T3S_014 not in the Motif Atlas

Geometric match to IL_5DCV_006

Geometric discrepancy: 0.1692

The information below is about IL_5DCV_006

Detailed Annotation

Major groove platform with intercalated tWH

Broad Annotation

No text annotation

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

6T3S|1|A|U|334
6T3S|1|A|G|335
*
6T3S|1|A|C|346
6T3S|1|A|U|347
6T3S|1|A|A|348
6T3S|1|A|A|349

Current chains

Chain A

Group IIC Intron Ribozyme

Nearby chains