IL_6T4Q_020

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6T4Q|1|C1|U|534, 6T4Q|1|C1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_020 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1067

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6T4Q|1|C1|G|531
6T4Q|1|C1|A|532
6T4Q|1|C1|A|533
6T4Q|1|C1|U|534
6T4Q|1|C1|G|535
6T4Q|1|C1|U|536
6T4Q|1|C1|A|537
6T4Q|1|C1|G|538
*
6T4Q|1|C1|U|553
6T4Q|1|C1|A|554
6T4Q|1|C1|U|555
6T4Q|1|C1|U|556
6T4Q|1|C1|A|557
6T4Q|1|C1|U|558
6T4Q|1|C1|A|559
6T4Q|1|C1|G|560
6T4Q|1|C1|C|561

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14-A

Chain LS

60S ribosomal protein L20-A