IL_6T4Q_043

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

6T4Q|1|C1|C|1016, 6T4Q|1|C1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_043 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.1921

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6T4Q|1|C1|G|1013
6T4Q|1|C1|U|1014
6T4Q|1|C1|U|1015
6T4Q|1|C1|C|1016
6T4Q|1|C1|C|1017
6T4Q|1|C1|G|1018
*
6T4Q|1|C1|U|1034
6T4Q|1|C1|G|1035
6T4Q|1|C1|A|1036
6T4Q|1|C1|C|1037

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LJ

60S ribosomal protein L11-B