IL_6T4Q_066

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6T4Q|1|C1|U|1629, 6T4Q|1|C1|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_066 not in the Motif Atlas

Homologous match to IL_8C3A_072

Geometric discrepancy: 0.113

The information below is about IL_8C3A_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6T4Q|1|C1|U|1627
6T4Q|1|C1|C|1628
6T4Q|1|C1|U|1629
6T4Q|1|C1|U|1630
6T4Q|1|C1|C|1631
*
6T4Q|1|C1|G|1811
6T4Q|1|C1|G|1812
6T4Q|1|C1|A|1813
6T4Q|1|C1|A|1814
6T4Q|1|C1|U|1815
6T4Q|1|C1|A|1816

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27-A