IL_6T4Q_067

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_067 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1041

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6T4Q|1|C1|U|1645
6T4Q|1|C1|G|1646
6T4Q|1|C1|A|1647
6T4Q|1|C1|A|1648
6T4Q|1|C1|U|1649
*
6T4Q|1|C1|A|1806
6T4Q|1|C1|G|1807
6T4Q|1|C1|G|1808
6T4Q|1|C1|A|1809
6T4Q|1|C1|A|1810

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LZ

60S ribosomal protein L27-A

Chain Lg

60S ribosomal protein L34-A