IL_6T4Q_236

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

6T4Q|1|C1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T4Q_236 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.0948

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

6T4Q|1|C1|U|1501
6T4Q|1|C1|C|1502
6T4Q|1|C1|A|1503
6T4Q|1|C1|A|1504
6T4Q|1|C1|C|1505
*
6T4Q|1|C1|G|1513
6T4Q|1|C1|G|1514
6T4Q|1|C1|A|1515

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17-A

Chain LR

60S ribosomal protein L19-A

Chain Ll

60S ribosomal protein L39