IL_6T59_038

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6T59|1|54|C|1214, 6T59|1|54|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_038 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2697

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6T59|1|54|C|1082
6T59|1|54|U|1083
6T59|1|54|C|1084
*
6T59|1|54|G|1213
6T59|1|54|C|1214
6T59|1|54|C|1215
6T59|1|54|C|1216
6T59|1|54|G|1217

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain F3

Ul30

Chain b3

eL29