IL_6T59_043

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

6T59|1|54|C|1378

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_043 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2333

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6T59|1|54|G|1360
6T59|1|54|G|1361
*
6T59|1|54|C|1376
6T59|1|54|G|1377
6T59|1|54|C|1378
6T59|1|54|C|1379

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain L3

eL13

Chain N3

Ribosomal protein L15