IL_6T59_044

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_044 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3013

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6T59|1|54|G|1425
6T59|1|54|G|1426
6T59|1|54|A|1427
6T59|1|54|U|1428
6T59|1|54|C|1429
*
6T59|1|54|G|1455
6T59|1|54|C|1456
6T59|1|54|G|1457
6T59|1|54|C|1458
6T59|1|54|A|1459
6T59|1|54|C|1460

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain Q3

eL18

Chain b3

eL29