IL_6T59_045

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_045 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.183

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6T59|1|54|C|1431
6T59|1|54|G|1432
6T59|1|54|A|1433
6T59|1|54|G|1434
*
6T59|1|54|C|1450
6T59|1|54|G|1451
6T59|1|54|A|1452
6T59|1|54|G|1453

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain Q3

eL18