3D structure

PDB id
6T59 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
GAUUA*UUCUC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6T59_062 not in the Motif Atlas
Homologous match to IL_8C3A_044
Geometric discrepancy: 0.1067
The information below is about IL_8C3A_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_05145.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
13

Unit IDs

6T59|1|54|G|1745
6T59|1|54|A|1746
6T59|1|54|U|1747
6T59|1|54|U|1748
6T59|1|54|A|1749
*
6T59|1|54|U|1781
6T59|1|54|U|1782
6T59|1|54|C|1783
6T59|1|54|U|1784
6T59|1|54|C|1785

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain 74
5S ribosomal RNA; 5S rRNA
Chain D3
60S ribosomal protein L5
Chain I3
60S ribosomal protein L10

Coloring options:


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