IL_6T59_085

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6T59|1|54|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6T59_085 not in the Motif Atlas

Geometric match to IL_4WF9_041

Geometric discrepancy: 0.3256

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6T59|1|54|G|2542
6T59|1|54|A|2543
6T59|1|54|G|2544
6T59|1|54|U|2545
6T59|1|54|G|2546
6T59|1|54|G|2547
*
6T59|1|54|C|2772
6T59|1|54|G|2773
6T59|1|54|C|2774

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 84

5.8S ribosomal RNA; 5.8S rRNA

Chain k3

eL38